Software
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symsimSymsim is a simple simulation of sympatric speciation in recombining microbial populations.
Get the code and documentation. Reference: Friedman J, Alm EJ, Shapiro BJ. (2013) PLOS ONE |
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STARRInIGHTSStrain-based Tree Analysis and Recombinant Region Inference In Genomes from High-Throughput Sequencing projects
Get the code and documentation. Reference: Shapiro BJ et al. (2012) Science. BacGWASim |
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A simulator of bacterial genomes and phenotypes to benchmark genome-wide association studies
Get the code and documentation. Reference: Saber MM & Shapiro BJ (2020) Microbial Genomics. |
Miscellany
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scikuA collection of illustrated science poetry.
www.sciku.org |
